Transcript: lnc-SOD1-3:2

Basic information

LNCipedia transcript ID: lnc-SOD1-3:2 
LNCipedia gene ID: lnc-SOD1-3
Ensembl Gene ID: ENSG00000237594
Ensembl Transcript ID: ENST00000433071
Location (hg38): chr21:31559245-31560487
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 822 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433071.2
Alternative gene names: ENSG00000237594.2; AP000251.3; AP000251.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -526.814 non-coding 
CPAT coding probability 32.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD1-3:2
4.0 lnc-SOD1-3:2
4.1 lnc-SOD1-3:2
5.0 lnc-SOD1-3:2
5.1 lnc-OLIG1-29:4
5.2 lnc-SOD1-3:2