Transcript: lnc-SOD1-9:1

Basic information

LNCipedia transcript ID: lnc-SOD1-9:1 
LNCipedia gene ID: lnc-SOD1-9
Ensembl Gene ID: ENSG00000273091
Ensembl Transcript ID: ENST00000610276
Location (hg38): chr21:31735732-31736407
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610276.1
Alternative gene names: ENSG00000273091.1; AP000255.6; AP000255.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.6911 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD1-9:1
4.0 lnc-SOD1-9:1
4.1 lnc-SOD1-9:1
5.0 lnc-SOD1-9:1
5.1 lnc-OLIG1-20:6
5.2 lnc-SOD1-9:1