Transcript: lnc-SOD1-9:3

Basic information

LNCipedia transcript ID: lnc-SOD1-9:3 
LNCipedia gene ID: lnc-SOD1-9
Location (hg38): chr21:31732271-31746954
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5167 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055891.1|MICT00000225049.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.8851 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOD1-9:3
5.0 lnc-SOD1-9:3
5.1 lnc-OLIG1-20:2
5.2 lnc-SOD1-9:3