Transcript: lnc-SOD2-2:1

Basic information

LNCipedia transcript ID: lnc-SOD2-2:1 
LNCipedia gene ID: lnc-SOD2-2
Location (hg38): chr6:159569549-159595202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1638 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012347; NONHSAT115849
Alternative gene names: XLOC_005900; linc-TAGAP-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.1101 non-coding 
CPAT coding probability 17.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD2-2:1
3.1 lnc-SOD2-2:1
4.0 lnc-SOD2-2:1
4.1 lnc-SOD2-2:1
5.0 lnc-SOD2-2:1
5.1 lnc-TAGAP-9:1
5.2 lnc-SOD2-2:1