Transcript: lnc-SOD2-2:2

Basic information

LNCipedia transcript ID: lnc-SOD2-2:2 
LNCipedia gene ID: lnc-SOD2-2
Location (hg38): chr6:159586957-159595189
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1392 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012349; NONHSAT115852
Alternative gene names: XLOC_005900; linc-TAGAP-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7507 non-coding 
CPAT coding probability 16.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD2-2:2
3.1 lnc-SOD2-2:2
4.0 lnc-SOD2-2:2
4.1 lnc-SOD2-2:2
5.0 lnc-SOD2-2:2
5.1 lnc-TAGAP-9:2
5.2 lnc-SOD2-2:2