Transcript: lnc-SOD2-3:1

Basic information

LNCipedia transcript ID: lnc-SOD2-3:1 
LNCipedia gene ID: lnc-SOD2-3
Location (hg38): chr6:159375832-159383305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012345; NONHSAT115840
Alternative gene names: XLOC_005899; linc-TAGAP-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.0143 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOD2-3:2
3.1 lnc-SOD2-3:1
4.0 lnc-SOD2-3:1
4.1 lnc-SOD2-3:1
5.0 lnc-SOD2-3:1
5.1 lnc-TAGAP-6:2
5.2 lnc-SOD2-3:1