Transcript: lnc-SOD2-5:2

Basic information

LNCipedia transcript ID: lnc-SOD2-5:2 
LNCipedia gene ID: lnc-SOD2-5
Location (hg38): chr6:159783990-159789672
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 561 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT115878
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 1502.1076 coding 
CPAT coding probability 62.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOD2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD2-5:2
4.0 lnc-SOD2-5:2
4.1 lnc-SOD2-5:2
5.0 lnc-SOD2-5:2
5.1 lnc-TAGAP-17:2
5.2 lnc-SOD2-5:2