Transcript: lnc-SORCS1-4:1

Basic information

LNCipedia transcript ID: lnc-SORCS1-4:1 
LNCipedia gene ID: lnc-SORCS1-4
Location (hg38): chr10:105489596-105502355
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429680; ENST00000429680.1; RP11-78C6.1-001; OTTHUMT00000050223.1; NONHSAT016247
Alternative gene names: ENSG00000236043; RP11-78C6.1; ENSG00000236043.1; OTTHUMG00000019012.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.7894 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS1-4:1
3.1 lnc-SORCS1-4:1
4.0 lnc-SORCS1-4:1
4.1 lnc-SORCS1-4:1
5.0 lnc-SORCS1-4:1
5.1 lnc-BBIP1-57:7
5.2 lnc-SORCS1-4:1