Transcript: lnc-SORCS1-4:7

Basic information

LNCipedia transcript ID: lnc-SORCS1-4:7 
LNCipedia gene ID: lnc-SORCS1-4
Ensembl Gene ID: ENSG00000229466
Ensembl Transcript ID: ENST00000447757
Location (hg38): chr10:105808775-105819197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447757; ENST00000447757.1; RP11-56I23.1-001; OTTHUMT00000050226.1; NONHSAT016256; FPKM1_group_3857_transcript_1
Alternative gene names: ENSG00000229466; RP11-56I23.1; ENSG00000229466.1; OTTHUMG00000019015.1; AL731574.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.5891 non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS1-4:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS1-2:1
3.1 lnc-SORCS1-2:1
4.0 lnc-SORCS1-4:7
4.1 lnc-SORCS1-4:7
5.0 lnc-SORCS1-4:7
5.1 lnc-BBIP1-57:6
5.2 lnc-SORCS1-4:7