Transcript: lnc-SORCS2-1:6

Basic information

LNCipedia transcript ID: lnc-SORCS2-1:6 
LNCipedia gene ID: lnc-SORCS2-1
Location (hg38): chr4:7754077-7755084
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1008 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272620.1|FTMT21600000383.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.024 non-coding 
CPAT coding probability 14.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS2-1:6 no no no no

Available literature

  1. Zeng (2016), AFAP1-AS1, a long noncoding RNA upregulated in lung cancer and promotes invasion and metastasis., Tumour Biol.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  3. Bo (2015), Upregulated long non-coding RNA AFAP1-AS1 expression is associated with progression and poor prognosis of nasopharyngeal carcinoma., Oncotarget
  4. Deng (2015), The up-regulation of long non-coding RNA AFAP1-AS1 is associated with the poor prognosis of NSCLC patients., Biomed. Pharmacother.
  5. Wei (2015), Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor., Oncotarget
  6. Ye (2015), High expression of AFAP1-AS1 is associated with poor survival and short-term recurrence in pancreatic ductal adenocarcinoma., J Transl Med
  7. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE
  8. Cao (2013), Integrated analysis of long noncoding RNA and coding RNA expression in esophageal squamous cell carcinoma., Int J Genomics
  9. Wu (2013), Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma., Gastroenterology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SORCS2-1:6
5.0 lnc-SORCS2-1:6
5.1 lnc-GPR78-152:1
5.2 lnc-SORCS2-1:6