Transcript: lnc-SORCS3-5:1

Basic information

LNCipedia transcript ID: lnc-SORCS3-5:1 
LNCipedia gene ID: lnc-SORCS3-5
Location (hg38): chr10:106140166-106163753
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2093 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017716
Alternative gene names: XLOC_008603; linc-ADD3-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6965 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS3-5:1
3.1 lnc-SORCS3-5:1
4.0 lnc-SORCS3-5:1
4.1 lnc-SORCS3-5:1
5.0 lnc-SORCS3-5:1
5.1 lnc-SMC3-48:4
5.2 lnc-SORCS3-5:1