Transcript: lnc-SORCS3-5:2

Basic information

LNCipedia transcript ID: lnc-SORCS3-5:2 
LNCipedia gene ID: lnc-SORCS3-5
Ensembl Gene ID: ENSG00000229775
Ensembl Transcript ID: ENST00000449761
Location (hg38): chr10:106140264-106188722
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 463 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017863; ENST00000449761; ENST00000449761.1; RP11-298H24.1-001; OTTHUMT00000050227.1; NONHSAT016269; ENST00000449761.5
Alternative gene names: XLOC_008603; linc-ADD3-8; ENSG00000229775; RP11-298H24.1; ENSG00000229775.1; OTTHUMG00000019016.1; ENSG00000229775.2; ENSG00000229775.6; AL353148.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.8423 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS3-5:2
3.1 lnc-SORCS3-5:2
4.0 lnc-SORCS3-5:2
4.1 lnc-SORCS3-5:2
5.0 lnc-SORCS3-5:2
5.1 lnc-SMC3-48:6
5.2 lnc-SORCS3-5:2