Transcript: lnc-SORCS3-5:7

Basic information

LNCipedia transcript ID: lnc-SORCS3-5:7 
LNCipedia gene ID: lnc-SORCS3-5
Ensembl Gene ID: ENSG00000229775
Ensembl Transcript ID: ENST00000426752
Location (hg38): chr10:106184385-106187795
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016275; ENST00000426752.2
Alternative gene names: ENSG00000229775.2; RP11-298H24.1; ENSG00000229775.6; AL353148.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.0276 non-coding 
CPAT coding probability 2.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-5:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SORCS3-5:7
4.0 lnc-SORCS3-5:7
4.1 lnc-SORCS3-5:7
5.0 lnc-SORCS3-5:7
5.1 lnc-SMC3-48:10
5.2 lnc-SORCS3-5:7