Transcript: lnc-SORCS3-6:2

Basic information

LNCipedia transcript ID: lnc-SORCS3-6:2 
LNCipedia gene ID: lnc-SORCS3-6
Location (hg38): chr10:106285492-106310953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018814; NONHSAT016279
Alternative gene names: XLOC_008604; linc-ADD3-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.9595 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SORCS3-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SORCS3-6:2
3.1 lnc-SORCS3-6:2
4.0 lnc-SORCS3-6:2
4.1 lnc-SORCS3-6:2
5.0 lnc-SORCS3-6:2
5.1 lnc-SMC3-47:3
5.2 lnc-SORCS3-6:2