Transcript: lnc-SOX11-1:1

Basic information

LNCipedia transcript ID: lnc-SOX11-1:1 
LNCipedia gene ID: lnc-SOX11-1
Location (hg38): chr2:5696220-5707659
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 763 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000455579.1; AC010729.1-001; OTTHUMT00000322562.1; NONHSAT068816
Alternative gene names: ENSG00000242540.1; AC010729.1; OTTHUMG00000151423.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.9232 non-coding 
CPAT coding probability 10.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX11-1:1 yes no no no

Available literature

  1. Sun (2015), A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX11-1:1
4.0 lnc-SOX11-1:1
4.1 lnc-SOX11-1:1
5.0 lnc-SOX11-1:1
5.1 lnc-SNX17-247:2
5.2 lnc-SOX11-1:1