Transcript: lnc-SOX11-2:13

Basic information

LNCipedia transcript ID: lnc-SOX11-2:13 
LNCipedia gene ID: lnc-SOX11-2
Location (hg38): chr2:5726469-5730342
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1726 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236106.1|ENST00000413960.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.8933 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX11-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOX11-2:13
5.0 lnc-SOX11-2:13
5.1 lnc-SNX17-246:2
5.2 lnc-SOX11-2:13