Transcript: lnc-SOX13-1:1

Basic information

LNCipedia transcript ID: lnc-SOX13-1:1 
LNCipedia gene ID: lnc-SOX13-1
Ensembl Gene ID: ENSG00000261065
Ensembl Transcript ID: ENST00000565388
Location (hg38): chr1:204131062-204131966
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 444 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565388.1; RP11-74C13.4-001; OTTHUMT00000087899.1; NONHSAT008925
Alternative gene names: ENSG00000261065.1; RP11-74C13.4; OTTHUMG00000036063.1; AL592146.2; AL592146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.3332 non-coding 
CPAT coding probability 10.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX13-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX13-1:1
4.0 lnc-SOX13-1:1
4.1 lnc-SOX13-1:1
5.0 lnc-SOX13-1:1
5.1 lnc-CNTN2-28:1
5.2 lnc-SOX13-1:1