Transcript: lnc-SOX14-2:1

Basic information

LNCipedia transcript ID: lnc-SOX14-2:1 
LNCipedia gene ID: lnc-SOX14-2
Ensembl Gene ID: ENSG00000261146
Ensembl Transcript ID: ENST00000566529
Location (hg38): chr3:137791973-137796678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4706 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566529.1; RP11-2A4.4-001; OTTHUMT00000431116.1; NONHSAT092315
Alternative gene names: ENSG00000261146.1; RP11-2A4.4; OTTHUMG00000175811.1; AC007159.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.4968 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX14-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX14-2:1
4.0 lnc-SOX14-2:1
4.1 lnc-SOX14-2:1
5.0 lnc-SOX14-2:1
5.1 lnc-FAIM-15:1
5.2 lnc-SOX14-2:1