Transcript: lnc-SOX17-4:2

Basic information

LNCipedia transcript ID: lnc-SOX17-4:2 
LNCipedia gene ID: lnc-SOX17-4
Location (hg38): chr8:54554361-54561907
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 917 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000522711.1; RP11-53M11.3-001; OTTHUMT00000378858.1; NONHSAT126638
Alternative gene names: ENSG00000254142.1; RP11-53M11.3; OTTHUMG00000164451.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.9781 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX17-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-1:1
4.0 lnc-RP1-1:1
4.1 lnc-RP1-1:1
5.0 lnc-RP1-1:1
5.1 lnc-SDCBP-67:2
5.2 lnc-SOX17-4:2