Transcript: lnc-SOX17-4:4

Basic information

LNCipedia transcript ID: lnc-SOX17-4:4 
LNCipedia gene ID: lnc-SOX17-4
Location (hg38): chr8:54554362-54558914
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 284 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254142.2|ENST00000522711.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -183.0971 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX17-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP1-1:8
5.0 lnc-RP1-1:8
5.1 lnc-SDCBP-67:4
5.2 lnc-SOX17-4:4