Transcript: lnc-SOX5-5:2

Basic information

LNCipedia transcript ID: lnc-SOX5-5:2 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:23920332-24562912
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1189 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255864.1|ENCT00000099896.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.4366 non-coding 
CPAT coding probability 24.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX5-5:2 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOX5-5:2
5.0 lnc-SOX5-5:2
5.1 lnc-WBP11-68:2
5.2 lnc-SOX5-5:2