Transcript: lnc-SOX5-5:27

Basic information

LNCipedia transcript ID: lnc-SOX5-5:27 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:24367935-24562382
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 832 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000538905; ENST00000538905.1; RP11-444D3.1-004; OTTHUMT00000402100.1; NONHSAT027322
Alternative gene names: ENSG00000255864; RP11-444D3.1; ENSG00000255864.1; OTTHUMG00000169057.3; ENSG00000255864.5; AC069208.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4366 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX5-5:27 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCAT1-2:5
3.1 lnc-BCAT1-2:5
4.0 lnc-BCAT1-2:5
4.1 lnc-SOX5-5:27
5.0 lnc-SOX5-5:27
5.1 lnc-WBP11-68:27
5.2 lnc-SOX5-5:27