Transcript: lnc-SOX5-5:33

Basic information

LNCipedia transcript ID: lnc-SOX5-5:33 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:23920038-23949592
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 606 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT027310
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -552.0472 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX5-5:33 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCAT1-5:1
4.0 lnc-BCAT1-5:1
4.1 lnc-SOX5-5:33
5.0 lnc-SOX5-5:33
5.1 lnc-WBP11-68:33
5.2 lnc-SOX5-5:33