Transcript: lnc-SOX5-5:37

Basic information

LNCipedia transcript ID: lnc-SOX5-5:37 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:23575659-23632194
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 376 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT027306
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.9751 non-coding 
CPAT coding probability 45.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOX5-5:37 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0528-5:4
4.0 lnc-KIAA0528-5:4
4.1 lnc-SOX5-5:37
5.0 lnc-SOX5-5:37
5.1 lnc-WBP11-68:37
5.2 lnc-SOX5-5:37