Transcript: lnc-SOX6-3:5

Basic information

LNCipedia transcript ID: lnc-SOX6-3:5 
LNCipedia gene ID: lnc-SOX6-3
Location (hg38): chr11:16465781-16607727
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 660 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT018175
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.5829 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX6-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLEKHA7-3:3
4.0 lnc-SOX6-3:5
4.1 lnc-SOX6-3:5
5.0 lnc-SOX6-3:5
5.1 lnc-SOX6-3:5
5.2 lnc-SOX6-3:5