Transcript: lnc-SOX6-7:2

Basic information

LNCipedia transcript ID: lnc-SOX6-7:2 
LNCipedia gene ID: lnc-SOX6-7
Ensembl Gene ID: ENSG00000254789
Ensembl Transcript ID: ENST00000533082
Location (hg38): chr11:15572023-15622391
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533082; ENST00000533082.1; RP11-531H8.2-001; OTTHUMT00000386598.1; NONHSAT140013
Alternative gene names: ENSG00000254789; RP11-531H8.2; ENSG00000254789.1; OTTHUMG00000165840.1; ENSG00000254789.2; AC073172.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -594.5425 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX6-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX6-3:1
3.1 lnc-SOX6-3:1
4.0 lnc-SOX6-7:2
4.1 lnc-SOX6-7:2
5.0 lnc-SOX6-7:2
5.1 lnc-SOX6-7:2
5.2 lnc-SOX6-7:2