Transcript: lnc-SOX9-4:1

Basic information

LNCipedia transcript ID: lnc-SOX9-4:1 
LNCipedia gene ID: lnc-SOX9-4
Location (hg38): chr17:72425939-72428655
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000577281.1; RP11-57A1.1-001; OTTHUMT00000441430.1; NONHSAT146922
Alternative gene names: ENSG00000263680.1; RP11-57A1.1; OTTHUMG00000178302.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.2313 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX9-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX9-4:1
4.0 lnc-SOX9-4:1
4.1 lnc-SOX9-4:1
5.0 lnc-SOX9-4:1
5.1 lnc-TMEM94-61:2
5.2 lnc-SOX9-4:1