Transcript: lnc-SOX9-5:1

Basic information

LNCipedia transcript ID: lnc-SOX9-5:1 
LNCipedia gene ID: lnc-SOX9-5
Location (hg38): chr17:72642731-72644013
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000584975.1; CTD-3010D24.3-001; OTTHUMT00000441627.1; NONHSAT055707
Alternative gene names: ENSG00000263893.1; CTD-3010D24.3; OTTHUMG00000178340.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2765 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX9-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX9-5:1
4.0 lnc-SOX9-5:1
4.1 lnc-SOX9-5:1
5.0 lnc-SOX9-5:1
5.1 lnc-TMEM94-58:2
5.2 lnc-SOX9-5:1