Transcript: lnc-SOX9-5:3

Basic information

LNCipedia transcript ID: lnc-SOX9-5:3 
LNCipedia gene ID: lnc-SOX9-5
Ensembl Gene ID: ENSG00000263893
Ensembl Transcript ID: ENST00000584975
Location (hg38): chr17:72642731-72644490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 889 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584975.2
Alternative gene names: ENSG00000263893.2; CTD-3010D24.3; AC080037.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2765 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX9-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX9-5:3
4.0 lnc-SOX9-5:3
4.1 lnc-SOX9-5:3
5.0 lnc-SOX9-5:3
5.1 lnc-TMEM94-58:3
5.2 lnc-SOX9-5:3