Transcript: lnc-SOX9-6:2

Basic information

LNCipedia transcript ID: lnc-SOX9-6:2 
LNCipedia gene ID: lnc-SOX9-6
Ensembl Gene ID: ENSG00000225818
Ensembl Transcript ID: ENST00000450826
Location (hg38): chr17:71596476-71597279
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025196; ENST00000450826; ENST00000450826.1; AC118653.2-002; OTTHUMT00000255310.1; NONHSAT055634
Alternative gene names: XLOC_012298; linc-SOX9-3; ENSG00000225818; AC118653.2; ENSG00000225818.1; OTTHUMG00000132240.1; AC118653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.6108 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX9-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX9-3:2
3.1 lnc-SOX9-6:2
4.0 lnc-SOX9-6:2
4.1 lnc-SOX9-6:2
5.0 lnc-SOX9-6:2
5.1 lnc-TMEM94-62:2
5.2 lnc-SOX9-6:2