Transcript: lnc-SP140-3:16

Basic information

LNCipedia transcript ID: lnc-SP140-3:16 
LNCipedia gene ID: lnc-SP140-3
Location (hg38): chr2:230125310-230167494
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225963.3|ENST00000445199.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.3447 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SP140-3:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SP140-3:16
5.0 lnc-SP140-3:16
5.1 lnc-SP140-3:16
5.2 lnc-SP140-3:16