Transcript: lnc-SP140-3:2

Basic information

LNCipedia transcript ID: lnc-SP140-3:2 
LNCipedia gene ID: lnc-SP140-3
Ensembl Gene ID: ENSG00000225963
Ensembl Transcript ID: ENST00000445199
Location (hg38): chr2:230125310-230167494
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 517 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003119; ENST00000445199.1; AC093171.1-001; OTTHUMT00000337824.1; NONHSAT077260; ENST00000445199.3
Alternative gene names: XLOC_001894; linc-SP140-3; ENSG00000231578.1; AC093171.1; OTTHUMG00000154964.1; ENSG00000225963.3; AC009950.2; ENSG00000225963.7; AC009950.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3447 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SP140-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SP140-1:2
3.1 lnc-SP140-3:2
4.0 lnc-SP140-3:2
4.1 lnc-SP140-3:2
5.0 lnc-SP140-3:2
5.1 lnc-SP140-3:2
5.2 lnc-SP140-3:2