Transcript: lnc-SP140-3:3

Basic information

LNCipedia transcript ID: lnc-SP140-3:3 
LNCipedia gene ID: lnc-SP140-3
Location (hg38): chr2:230125033-230129012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 673 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT077258; FPKM1_group_18443_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.785 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SP140-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SP140-3:3
4.0 lnc-SP140-3:3
4.1 lnc-SP140-3:3
5.0 lnc-SP140-3:3
5.1 lnc-SP140-3:3
5.2 lnc-SP140-3:3