Transcript: lnc-SPACA3-3:1

Basic information

LNCipedia transcript ID: lnc-SPACA3-3:1 
LNCipedia gene ID: lnc-SPACA3-3
Ensembl Gene ID: ENSG00000265125
Ensembl Transcript ID: ENST00000579896
Location (hg38): chr17:33565764-33581453
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579896.1; RP11-31I22.3-002; OTTHUMT00000447559.1; NONHSAT052986; ENST00000579896.5
Alternative gene names: ENSG00000265125.1; RP11-31I22.3; OTTHUMG00000179665.1; ENSG00000265125.5; AC011824.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.2025 non-coding 
CPAT coding probability 12.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPACA3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPACA3-3:1
4.0 lnc-SPACA3-3:1
4.1 lnc-SPACA3-3:1
5.0 lnc-SPACA3-3:1
5.1 lnc-NSRP1-92:2
5.2 lnc-SPACA3-3:1