Transcript: lnc-SPAG1-3:2

Basic information

LNCipedia transcript ID: lnc-SPAG1-3:2 
LNCipedia gene ID: lnc-SPAG1-3
Ensembl Gene ID: ENSG00000253666
Ensembl Transcript ID: ENST00000523831
Location (hg38): chr8:100475690-100501148
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523831.1; KB-1615E4.2-001; OTTHUMT00000379897.1; NONHSAT128001
Alternative gene names: ENSG00000253666.1; KB-1615E4.2; OTTHUMG00000164722.1; AP000424.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.8635 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPAG1-3:2
4.0 lnc-SPAG1-3:2
4.1 lnc-SPAG1-3:2
5.0 lnc-SPAG1-3:2
5.1 lnc-CA2-163:5
5.2 lnc-SPAG1-3:2