Transcript: lnc-SPAG16-3:1

Basic information

LNCipedia transcript ID: lnc-SPAG16-3:1 
LNCipedia gene ID: lnc-SPAG16-3
Ensembl Gene ID: ENSG00000223373
Ensembl Transcript ID: ENST00000437261
Location (hg38): chr2:212911003-212919809
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003095; ENST00000437261; ENST00000437261.1; AC108066.1-001; OTTHUMT00000337268.1; NONHSAT076699
Alternative gene names: XLOC_001834; linc-SPAG16-2; ENSG00000223373; AC108066.1; ENSG00000223373.1; OTTHUMG00000154822.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.3672 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG16-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG16-2:1
3.1 lnc-SPAG16-3:1
4.0 lnc-SPAG16-3:1
4.1 lnc-SPAG16-3:1
5.0 lnc-SPAG16-3:1
5.1 lnc-CPS1-24:1
5.2 lnc-SPAG16-3:1