Transcript: lnc-SPAG16-7:2

Basic information

LNCipedia transcript ID: lnc-SPAG16-7:2 
LNCipedia gene ID: lnc-SPAG16-7
Ensembl Gene ID: ENSG00000270659
Ensembl Transcript ID: ENST00000604818
Location (hg38): chr2:213152970-213153659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 690 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147142; ENST00000604818.1
Alternative gene names: ENSG00000270659.1; RP11-105N14.1; AC079610.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.9393 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG16-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPAG16-7:2
4.0 lnc-SPAG16-7:2
4.1 lnc-SPAG16-7:2
5.0 lnc-SPAG16-7:2
5.1 lnc-CPS1-30:6
5.2 lnc-SPAG16-7:2