Transcript: lnc-SPANXB1-1:2

Basic information

LNCipedia transcript ID: lnc-SPANXB1-1:2 
LNCipedia gene ID: lnc-SPANXB1-1
Ensembl Gene ID: ENSG00000229269
Ensembl Transcript ID: ENST00000413328
Location (hg38): chrX:140931738-140997448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 217 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017017; ENST00000413328; ENST00000413328.1; RP11-298A8.2-001; OTTHUMT00000058584.1; NONHSAT138825
Alternative gene names: XLOC_008080; linc-SPANXB1-1; ENSG00000229269; RP11-298A8.2; ENSG00000229269.1; OTTHUMG00000022550.1; AL451048.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2463 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPANXB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPANXB2-1:1
3.1 lnc-SPANXB2-1:1
4.0 lnc-SPANXB2-1:1
4.1 lnc-SPANXB2-1:1
5.0 lnc-SPANXB2-1:1
5.1 lnc-MAGEA11-113:1
5.2 lnc-SPANXB1-1:2