Transcript: lnc-SPANXN4-6:1

Basic information

LNCipedia transcript ID: lnc-SPANXN4-6:1 
LNCipedia gene ID: lnc-SPANXN4-6
Ensembl Gene ID: ENSG00000225970
Ensembl Transcript ID: ENST00000423667
Location (hg38): chrX:143757737-143828133
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423667.1; RP3-526F5.2-001; OTTHUMT00000058625.1; NONHSAT138846
Alternative gene names: ENSG00000225970.1; RP3-526F5.2; OTTHUMG00000022587.1; AL500522.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.8273 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPANXN4-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2NL-1:1
4.0 lnc-UBE2NL-1:1
4.1 lnc-UBE2NL-1:1
5.0 lnc-UBE2NL-1:1
5.1 lnc-MAGEA11-99:1
5.2 lnc-SPANXN4-6:1