Transcript: lnc-SPARCL1-2:1

Basic information

LNCipedia transcript ID: lnc-SPARCL1-2:1 
LNCipedia gene ID: lnc-SPARCL1-2
Ensembl Gene ID: ENSG00000272856
Ensembl Transcript ID: ENST00000609450
Location (hg38): chr4:87460807-87462280
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609450.1
Alternative gene names: ENSG00000272856.1; RP11-710E1.2; AC112250.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.184 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPARCL1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPARCL1-2:1
4.0 lnc-SPARCL1-2:1
4.1 lnc-SPARCL1-2:1
5.0 lnc-SPARCL1-2:1
5.1 lnc-SPARCL1-2:1
5.2 lnc-SPARCL1-2:1