Transcript: lnc-SPATA19-9:5

Basic information

LNCipedia transcript ID: lnc-SPATA19-9:5 
LNCipedia gene ID: lnc-SPATA19-9
Location (hg38): chr11:133653746-133810170
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019809; NONHSAT025211
Alternative gene names: XLOC_009608; linc-OPCML


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -368.1274 non-coding 
CPAT coding probability 4.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA19-9:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA19-1:5
3.1 lnc-SPATA19-1:5
4.0 lnc-SPATA19-1:5
4.1 lnc-SPATA19-1:5
5.0 lnc-SPATA19-1:5
5.1 lnc-IGSF9B-7:5
5.2 lnc-SPATA19-9:5