Transcript: lnc-SPATA31A3-1:3

Basic information

LNCipedia transcript ID: lnc-SPATA31A3-1:3 
LNCipedia gene ID: lnc-SPATA31A3-1
Location (hg38): chr9:66976516-66976992
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT131239; ENST00000355345.4
Alternative gene names: ENSG00000204844.7; FAM74A3; OTTHUMG00000067149


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9761 non-coding 
CPAT coding probability 47.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75A3-1:3
4.0 FAM74A3:3
4.1 FAM74A3:3
5.0 FAM74A3:3
5.1 lnc-ZFAND5-46:3
5.2 lnc-SPATA31A3-1:3