Transcript: lnc-SPATA31A5-1:1

Basic information

LNCipedia transcript ID: lnc-SPATA31A5-1:1 
LNCipedia gene ID: lnc-SPATA31A5-1
Location (hg38): chr9:60929774-60936746
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1718 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000419990; ENST00000419990.1; FAM74A6-001; OTTHUMT00000128845.2; NONHSAT131260; ENST00000612305.1
Alternative gene names: ENSG00000234407; FAM74A6; ENSG00000234407.3; OTTHUMG00000058151.2; ENSG00000274516.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.3873 non-coding 
CPAT coding probability 20.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A5-1:1
3.1 lnc-FAM75A5-1:1
4.0 FAM74A6:1
4.1 FAM74A6:1
5.0 FAM74A6:1
5.1 lnc-ZNF658-76:1
5.2 lnc-SPATA31A5-1:1