Transcript: lnc-SPATA31A6-60:2

Basic information

LNCipedia transcript ID: lnc-SPATA31A6-60:2 
LNCipedia gene ID: lnc-SPATA31A6-60
RefSeq ID: NR_131213
Location (hg38): chr9:42788400-42789608
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 250 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131213.1
Alternative gene names: XLOC_007697


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31A6-60:2 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-DCAF10-60:2
5.1 lnc-DCAF10-60:2
5.2 lnc-SPATA31A6-60:2