Transcript: lnc-SPATA31D1-4:17

Basic information

LNCipedia transcript ID: lnc-SPATA31D1-4:17 
LNCipedia gene ID: lnc-SPATA31D1-4
Location (hg38): chr9:82273406-82428287
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457558; ENST00000457558.1; RP11-15B24.5-001; OTTHUMT00000052823.1; NONHSAT132705
Alternative gene names: ENSG00000228430; RP11-15B24.5; ENSG00000228430.1; OTTHUMG00000020098.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.3881 non-coding 
CPAT coding probability 39.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31D1-4:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75D1-3:1
3.1 lnc-FAM75D1-3:1
4.0 lnc-FAM75D1-4:21
4.1 lnc-FAM75D1-4:21
5.0 lnc-FAM75D1-4:21
5.1 lnc-SECISBP2-89:17
5.2 lnc-SPATA31D1-4:17