Transcript: lnc-SPATA31D1-4:24

Basic information

LNCipedia transcript ID: lnc-SPATA31D1-4:24 
LNCipedia gene ID: lnc-SPATA31D1-4
Location (hg38): chr9:82273459-82453803
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT132711; ENST00000585454.1; ENST00000585454.5
Alternative gene names: ENSG00000228430.4; RP11-15B24.5; ENSG00000228430.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.6558 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31D1-4:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75D1-4:11
4.0 lnc-FAM75D1-4:11
4.1 lnc-FAM75D1-4:11
5.0 lnc-FAM75D1-4:11
5.1 lnc-SECISBP2-89:24
5.2 lnc-SPATA31D1-4:24