Transcript: lnc-SPATA31D1-4:33

Basic information

LNCipedia transcript ID: lnc-SPATA31D1-4:33 
LNCipedia gene ID: lnc-SPATA31D1-4
Ensembl Gene ID: ENSG00000225085
Ensembl Transcript ID: ENST00000436084
Location (hg38): chr9:82405188-82406239
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015700; ENST00000436084; ENST00000436084.1; RP11-15B24.1-001; OTTHUMT00000052819.1; NONHSAT132717
Alternative gene names: XLOC_007421; linc-C9orf103-4; ENSG00000225085; RP11-15B24.1; ENSG00000225085.1; OTTHUMG00000020094.1; AL162726.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.6219 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31D1-4:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75D1-2:1
3.1 lnc-FAM75D1-2:1
4.0 lnc-FAM75D1-4:23
4.1 lnc-FAM75D1-4:23
5.0 lnc-FAM75D1-4:23
5.1 lnc-SECISBP2-89:33
5.2 lnc-SPATA31D1-4:33