Transcript: lnc-SPATA31D1-4:36

Basic information

LNCipedia transcript ID: lnc-SPATA31D1-4:36 
LNCipedia gene ID: lnc-SPATA31D1-4
Location (hg38): chr9:82453753-82455251
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 396 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016624
Alternative gene names: XLOC_007422; linc-C9orf103-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -292.1714 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31D1-4:36 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75D1-4:2
3.1 lnc-FAM75D1-4:2
4.0 lnc-FAM75D1-4:2
4.1 lnc-FAM75D1-4:2
5.0 lnc-FAM75D1-4:2
5.1 lnc-SECISBP2-89:36
5.2 lnc-SPATA31D1-4:36