Transcript: lnc-SPATA31E1-2:1

Basic information

LNCipedia transcript ID: lnc-SPATA31E1-2:1 
LNCipedia gene ID: lnc-SPATA31E1-2
Location (hg38): chr9:87864166-87866290
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000447524; ENST00000447524.1; XXyac-YM21GA2.4-001; OTTHUMT00000052953.1; NONHSAT132883
Alternative gene names: ENSG00000234460; XXyac-YM21GA2.4; ENSG00000234460.1; OTTHUMG00000020156.1; AL772337.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.2989 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA31E1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf79-2:1
3.1 lnc-C9orf79-2:1
4.0 lnc-C9orf79-2:1
4.1 lnc-C9orf79-2:1
5.0 lnc-C9orf79-2:1
5.1 lnc-SECISBP2-31:1
5.2 lnc-SPATA31E1-2:1