Transcript: lnc-SPATA32-1:5

Basic information

LNCipedia transcript ID: lnc-SPATA32-1:5 
LNCipedia gene ID: lnc-SPATA32-1
Ensembl Gene ID: ENSG00000233175
Ensembl Transcript ID: ENST00000587534
Location (hg38): chr17:45238028-45241734
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2003 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054043; ENST00000587534.1
Alternative gene names: ENSG00000233175.2; CTD-2020K17.3; AC008105.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 137.0556 coding 
CPAT coding probability 35.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPATA32-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf46-1:3
4.0 lnc-C17orf46-1:3
4.1 lnc-C17orf46-1:3
5.0 lnc-C17orf46-1:3
5.1 lnc-GFAP-20:5
5.2 lnc-SPATA32-1:5